Averaged measures in common space
=================================


See section `Common space <https://high-frequency-mri-database-supplementary.readthedocs.io/en/latest/pipeline/common_space.html>`_ for the method.


Diffusion DTI
--------------

+-----------------------------------+----------------------------------+----------------------------------+----------------------------------+
|                  FA               |                 MD               |                 RD               |                 AD               |
+===================================+==================================+==================================+==================================+
| .. image:: averaged_maps/FA.gif   | .. image:: averaged_maps/MD.gif  |  .. image:: averaged_maps/RD.gif | .. image:: averaged_maps/AD.gif  |
|    :width: 200                    |    :width: 200                   |    :width: 200                   |    :width: 200                   |
+-----------------------------------+----------------------------------+----------------------------------+----------------------------------+

A color version using the Jet colormap is available here: :download:`DTI color version<../download/dti_measures_gif_cs.zip>`


Diffusion HARDI
---------------

+------------------------------------------+----------------------------------------+
|               AFD total                  |                   NuFO                 |
+==========================================+========================================+
| .. image:: averaged_maps/afd_total.gif   | .. image:: averaged_maps/NuFO_gwm.gif  |
|    :width: 200                           |    :width: 200                         |
+------------------------------------------+----------------------------------------+

A color version using the Jet colormap is available here: :download:`HARDI color version<../download/hardi_measures_gif_cs.zip>`



Diffusion NODDI
---------------

+-------------------------------------+------------------------------------+-------------------------------------+---------------------------------+
|               ECvf                  |                  ICvf              |                   ISOvf             |                  OD             |
+=====================================+====================================+=====================================+=================================+
| .. image:: averaged_maps/ECvf.gif   | .. image:: averaged_maps/ICvf.gif  |  .. image:: averaged_maps/ISOvf.gif | .. image:: averaged_maps/OD.gif |
|    :width: 200                      |    :width: 200                     |    :width: 200                      |    :width: 200                  |
+-------------------------------------+------------------------------------+-------------------------------------+---------------------------------+

A color version using the Jet colormap is available here: :download:`NODDI color version<../download/noddi_measures_gif_cs.zip>`



Magnetization transfer image
----------------------------

+------------------------------------+-----------------------------------------+-----------------------------------+------------------------------------+
|                ihMTR               |                ihMTdR1sat               |                 MTR               |                MTsat               |
+====================================+=========================================+===================================+====================================+
| .. image:: averaged_maps/ihMTR.gif | .. image:: averaged_maps/ihMTdR1sat.gif |  .. image:: averaged_maps/MTR.gif | .. image:: averaged_maps/MTsat.gif |
|    :width: 200                     |    :width: 200                          |    :width: 200                    |    :width: 200                     |
+------------------------------------+-----------------------------------------+-----------------------------------+------------------------------------+

A color version using the Jet colormap is available here: :download:`MTI color version<../download/mti_measures_gif_cs.zip>`